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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rer1Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. (187 aa)    
Predicted Functional Partners:
LOC111236143
Uncharacterized protein.
   
 
 0.687
surf4
Surfeit 4.
   
 
 0.687
preb
Prolactin regulatory element binding.
   
 
 0.659
LOC111217911
Uncharacterized protein.
    
 
 0.653
canx
Calnexin.
    
 
 0.653
cope
Coatomer protein complex, subunit epsilon.
   
 
 0.637
sec63
SEC63 homolog, protein translocation regulator.
      
 0.608
ergic3
ERGIC and golgi 3.
   
  
 0.600
rasl10a
RAS-like, family 10, member A.
    
 
 0.597
tmed2
Transmembrane p24 trafficking protein 2.
   
 
 0.595
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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