Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
msantd4Myb/SANT-like DNA-binding domain containing 4 with coiled-coils. (353 aa)    
Predicted Functional Partners:
ankrd49
Ankyrin repeat domain 49.
    
 0.684
aasdhppt
Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.
    
 
 0.666
hspa13
Heat shock protein 70 family, member 13.
    
 0.626
LOC111233279
Family with sequence similarity 110 member B.
      
 0.599
mars2
Methionyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.590
ccdc117
Si:ch211-102c2.7.
      
 0.562
mars1
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 0.554
veph1
Ventricular zone expressed PH domain-containing 1.
      
 0.511
rpl31
Ribosomal protein L31.
    
 
 0.461
LOC111218078
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.458
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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