Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111220639Uncharacterized protein; Belongs to the peptidase C2 family. (700 aa)    
Predicted Functional Partners:
tln1
Talin 1.
   
 0.913
LOC111218754
Talin 2a.
   
 0.910
tln2
Talin 2b.
   
 0.910
ENSSDUP00000031189
Uncharacterized protein.
   
 0.691
ENSSDUP00000031197
Uncharacterized protein.
   
 0.691
LOC111221747
Zgc:153993.
   
 0.663
ENSSDUP00000024753
Uncharacterized protein.
    
 0.658
bax
BCL2 associated X, apoptosis regulator a.
    
 0.658
LOC111216826
Uncharacterized protein.
   
 0.649
LOC111222318
Calpain, small subunit 1 b.
   
 0.649
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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