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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd28Ankyrin repeat domain 28b. (1052 aa)    
Predicted Functional Partners:
PPP6C
Serine/threonine-protein phosphatase.
    
 0.682
LOC111221153
Serine/threonine-protein phosphatase.
    
 0.682
ppp6r2
Protein phosphatase 6, regulatory subunit 2b.
    
 0.636
LOC111224522
Protein phosphatase 6, regulatory subunit 2a.
    
 0.636
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.636
ift81
Intraflagellar transport 81 homolog.
    
 0.467
ift88
Intraflagellar transport 88 homolog.
   
 0.445
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.438
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.432
rela
V-rel avian reticuloendotheliosis viral oncogene homolog A.
   
 0.429
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.