Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ankrd28Ankyrin repeat domain 28b. (1052 aa)    
Predicted Functional Partners:
PPP6C
Serine/threonine-protein phosphatase.
    
 0.831
LOC111221153
Serine/threonine-protein phosphatase.
    
 0.831
ppp6r2
Protein phosphatase 6, regulatory subunit 2b.
   
 0.723
LOC111224522
Protein phosphatase 6, regulatory subunit 2a.
   
 0.723
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
   
 0.723
usp10
Ubiquitin carboxyl-terminal hydrolase.
   
   0.677
eno4
Enolase 4.
    
 
 0.517
LOC111238220
CRK proto-oncogene, adaptor protein.
    
 0.461
pla2g7
Platelet-activating factor acetylhydrolase.
      
 0.444
ankrd52
Ankyrin repeat domain 52a.
    
 0.434
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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