STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111227563Uncharacterized protein. (1545 aa)    
Predicted Functional Partners:
wdr6
WD repeat domain 6.
   
 
 0.639
ifih1
Interferon induced with helicase C domain 1.
   
 0.566
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
    
 0.550
ifi35
Interferon-induced protein 35.
   
 
 0.529
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.512
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.510
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
  
 
 0.508
vtcn1
V-set domain containing T cell activation inhibitor 1.
    
 0.483
ndufaf2
NADH:ubiquinone oxidoreductase complex assembly factor 2.
      
 0.469
pkhd1l1
Si:ch211-244a23.1.
     
 0.469
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.