STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111235085CCAAT enhancer binding protein beta. (299 aa)    
Predicted Functional Partners:
LOC111216707
Activating transcription factor 4a.
   
 0.967
LOC111230364
Activating transcription factor 4b.
   
 0.923
myb
V-myb avian myeloblastosis viral oncogene homolog.
    
 0.892
ddit3
DNA-damage-inducible transcript 3.
    
 0.830
Cebpd
CCAAT/enhancer-binding protein.
   
0.814
atf3
Activating transcription factor 3.
   
 0.787
LOC111219918
E1A binding protein p300 a.
    
 0.769
LOC111230324
E1A binding protein p300 b.
    
 0.769
LOC111216358
Si:ch211-153j24.3.
   
 0.696
LOC111236845
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
    
 0.684
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.