STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111235085CCAAT enhancer binding protein beta. (299 aa)    
Predicted Functional Partners:
LOC111236845
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
    
 0.973
LOC111230214
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
    
 0.973
ddit3
DNA-damage-inducible transcript 3.
   
 0.966
atf3
Activating transcription factor 3.
   
 0.933
sp1
Sp1 transcription factor.
    
 0.919
LOC111219918
E1A binding protein p300 a.
    
 0.902
LOC111230324
E1A binding protein p300 b.
    
 0.902
rb1
Retinoblastoma 1.
    
 
 0.893
PPARG
Peroxisome proliferator activated receptor gamma.
    
 0.870
LOC111216707
Activating transcription factor 4a.
   
 0.867
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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