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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000002086HECT domain-containing protein. (700 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
  
 0.939
rps27a
Ribosomal protein S27a.
    
 
 0.758
bub3
BUB3 mitotic checkpoint protein.
    
 
 0.542
ENSSDUP00000009749
Ubiquitin-like domain-containing protein.
    
   0.520
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.520
LOC111228782
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.520
LOC111222475
Eukaryotic translation initiation factor 4, gamma 2b.
   
   0.509
LOC111238974
Uncharacterized protein.
   
   0.509
EIF4G1
Eukaryotic translation initiation factor 4 gamma 1.
   
   0.509
eif4g3
Eukaryotic translation initiation factor 4 gamma, 3a.
   
   0.509
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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