Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111225547Ankyrin repeat and SOCS box containing 2b. (588 aa)    
Predicted Functional Partners:
LOC111216894
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.822
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.822
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.821
rnf7
Ring finger protein 7.
    
 0.766
LOC111217678
Elongin B.
    
 0.645
ELOB
Elongin B.
    
 0.645
LOC111229481
Filamin C, gamma b (actin binding protein 280).
    
 0.622
LOC111237012
Uncharacterized protein.
    
 0.622
FLNB
Filamin B.
    
 0.622
LOC111229537
Filamin C, gamma a (actin binding protein 280).
    
 0.622
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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