Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000002153BHLH domain-containing protein. (161 aa)    
Predicted Functional Partners:
LOC111233015
Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.
    
 
 0.781
snai2
Snail family zinc finger 2.
   
 
 0.750
fbxw11
F-box and WD repeat domain containing 11b.
    
 
 0.671
foxn4
Forkhead box N4.
     
 0.623
LOC111219043-2
Nicotinamide-nucleotide adenylyltransferase.
    
   0.590
ENSSDUP00000018760
Nicotinamide-nucleotide adenylyltransferase.
    
   0.590
LOC111230938
Lysine methyltransferase 5Ab.
    
  0.569
kmt5a
Lysine methyltransferase 5Aa.
    
  0.569
TCF4
Transcription factor 4.
    
 
 0.564
LOC111228963
Transcription factor 3a.
    
 
 0.564
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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