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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kctd7Potassium channel tetramerization domain containing 7. (343 aa)    
Predicted Functional Partners:
commd1
Copper metabolism (Murr1) domain containing 1.
     
 0.603
LOC111224075
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.601
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.601
KLHL11-2
Kelch like family member 11.
     
 0.595
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
   
  
 0.590
asb1
Ankyrin repeat and SOCS box containing 1.
     
 0.571
tbl2
Transducin (beta)-like 2.
      
 0.535
ube2f
Ubiquitin-conjugating enzyme E2F (putative); Belongs to the ubiquitin-conjugating enzyme family.
    
  0.519
ube2m
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.519
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
   
 
  0.498
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.