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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf141Ring finger protein 141. (225 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
     
 0.761
rps27a
Ribosomal protein S27a.
    
  0.510
cfap73
DUF4200 domain-containing protein.
      
 0.469
RSPH1
Radial spoke head component 1.
      
 0.467
spata4
Spermatogenesis associated 4.
      
 0.465
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
    0.434
ostf1
Osteoclast stimulating factor 1.
      
 0.431
LOC111220252
Leucine rich repeat containing 18b.
      
 0.429
Lrrc18
Leucine rich repeat containing 18a.
      
 0.429
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.