agrn protein (Seriola dumerili) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

agrn

Agrin. (2090 aa)

Predicted Functional Partners:

LOC111217375

0.969

dag1

0.969

lrp4

0.744

LOC111227422

0.649

lrp2

0.649

ENSSDUP00000028691

0.649

ENSSDUP00000028719

0.649

LOC111220094

0.649

lrp6

0.600

lrp5

0.600

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000028691	agrn	ENSSDUP00000028691	ENSSDUP00000002389	Si:dkey-88l16.3.	Agrin.	0.649
ENSSDUP00000028719	agrn	ENSSDUP00000028719	ENSSDUP00000002389	Uncharacterized protein.	Agrin.	0.649
LOC111217375	agrn	ENSSDUP00000021386	ENSSDUP00000002389	Peptidase S72 domain-containing protein.	Agrin.	0.969
LOC111217375	dag1	ENSSDUP00000021386	ENSSDUP00000024420	Peptidase S72 domain-containing protein.	Dystroglycan 1.	0.901
LOC111220094	agrn	ENSSDUP00000031542	ENSSDUP00000002389	Low density lipoprotein receptor-related protein 2b.	Agrin.	0.649
LOC111227422	agrn	ENSSDUP00000004871	ENSSDUP00000002389	Uncharacterized protein.	Agrin.	0.649
agrn	ENSSDUP00000028691	ENSSDUP00000002389	ENSSDUP00000028691	Agrin.	Si:dkey-88l16.3.	0.649
agrn	ENSSDUP00000028719	ENSSDUP00000002389	ENSSDUP00000028719	Agrin.	Uncharacterized protein.	0.649
agrn	LOC111217375	ENSSDUP00000002389	ENSSDUP00000021386	Agrin.	Peptidase S72 domain-containing protein.	0.969
agrn	LOC111220094	ENSSDUP00000002389	ENSSDUP00000031542	Agrin.	Low density lipoprotein receptor-related protein 2b.	0.649
agrn	LOC111227422	ENSSDUP00000002389	ENSSDUP00000004871	Agrin.	Uncharacterized protein.	0.649
agrn	dag1	ENSSDUP00000002389	ENSSDUP00000024420	Agrin.	Dystroglycan 1.	0.969
agrn	lrp2	ENSSDUP00000002389	ENSSDUP00000027277	Agrin.	Low density lipoprotein receptor-related protein 2a.	0.649
agrn	lrp4	ENSSDUP00000002389	ENSSDUP00000021720	Agrin.	Low density lipoprotein receptor-related protein 4.	0.744
agrn	lrp5	ENSSDUP00000002389	ENSSDUP00000028546	Agrin.	Low density lipoprotein receptor-related protein 5.	0.600
agrn	lrp6	ENSSDUP00000002389	ENSSDUP00000016957	Agrin.	Low-density lipoprotein receptor-related protein; Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Belongs to the LDLR family.	0.600
dag1	LOC111217375	ENSSDUP00000024420	ENSSDUP00000021386	Dystroglycan 1.	Peptidase S72 domain-containing protein.	0.901
dag1	agrn	ENSSDUP00000024420	ENSSDUP00000002389	Dystroglycan 1.	Agrin.	0.969
lrp2	agrn	ENSSDUP00000027277	ENSSDUP00000002389	Low density lipoprotein receptor-related protein 2a.	Agrin.	0.649
lrp4	agrn	ENSSDUP00000021720	ENSSDUP00000002389	Low density lipoprotein receptor-related protein 4.	Agrin.	0.744