STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111216352Matrilin 3a. (344 aa)    
Predicted Functional Partners:
lum
Lumican.
   
 0.672
ENSSDUP00000013582
Microfibril associated protein 5.
   
 0.497
ENSSDUP00000004365
Uncharacterized protein.
   
 0.469
LOC111224365
Recombination signal binding protein for immunoglobulin kappa J region-like.
   
 0.445
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.437
furin
Furin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family.
   
 
 0.434
LOC111221567
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
   
 
 0.434
LOC111216899
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.430
ENSSDUP00000011831
Microfibril associated protein 2.
   
 0.423
ENSSDUP00000011840
Uncharacterized protein.
   
 0.423
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.