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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mgme1Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair. Belongs to the MGME1 family. (341 aa)    
Predicted Functional Partners:
polg2
Polymerase (DNA directed), gamma 2, accessory subunit.
      
 0.599
twnk
Twinkle mtDNA helicase.
      
 0.595
grsf1
Uncharacterized protein.
    
 
 0.594
LOC111231927
Cytochrome c oxidase assembly factor 7.
      
 0.593
cunh18orf54
Uncharacterized protein.
      
 0.587
mlh3
MutL homolog 3 (E. coli).
      
 0.585
dna2
DNA replication helicase/nuclease 2.
   
  
 0.580
carnmt1
Carnosine N-methyltransferase 1.
      
 0.562
pym1
PYM homolog 1, exon junction complex associated factor.
      
 0.517
ecsit
ECSIT signalling integrator.
    
   0.515
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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