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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cd63Tetraspanin. (240 aa)    
Predicted Functional Partners:
LOC111234239
Scavenger receptor class B, member 2c; Belongs to the CD36 family.
     
 0.919
LOC111236467
Scavenger receptor class B, member 2a; Belongs to the CD36 family.
     
 0.919
LOC111239872
Uncharacterized protein; Belongs to the CD36 family.
     
 0.919
lamp2
Lysosomal-associated membrane protein 2.
    
 0.877
lamp1
Lysosomal associated membrane protein 1a.
   
 0.713
LOC111230068
CD4-1 molecule.
    
 0.669
rab27a
RAB27A, member RAS oncogene family.
     
 0.663
LOC111228527
Tetraspanin.
  
 
0.649
LOC111234725
Syndecan binding protein (syntenin) 2.
   
 0.649
CD9
Tetraspanin.
   
 
0.634
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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