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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000002563Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily. (374 aa)    
Predicted Functional Partners:
LOC111234353
Hephaestin-like 1b; Belongs to the multicopper oxidase family.
    
 0.690
LOC111222305
Ceruloplasmin; Belongs to the multicopper oxidase family.
    
 0.690
f5
Coagulation factor V; Belongs to the multicopper oxidase family.
    
 0.590
LOC111232364
Coagulation factor VIII, procoagulant component; Belongs to the multicopper oxidase family.
    
 0.590
edil3
EGF-like repeats and discoidin I-like domains 3a.
    
 0.590
LOC111218136
Neuropilin; Belongs to the neuropilin family.
    
 0.539
RS1-2
Retinoschisin 1.
    
 0.539
nrp2
Neuropilin; Belongs to the neuropilin family.
    
 0.539
LOC111218616
Cytochrome b reductase 1.
      
 0.473
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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