ndufb11 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ndufb11

NADH:ubiquinone oxidoreductase subunit B11. (144 aa)

Predicted Functional Partners:

ndufb4

0.999

ndufb5

0.999

ndufa7

0.999

ndufb10

0.999

ndufb7

0.999

ndufs5

0.999

LOC111224444

0.999

ndufb9

0.999

ndufa5

0.999

ndufab1

0.999

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111224444	ndufa5	ENSSDUP00000018225	ENSSDUP00000020055	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit A5.	0.998
LOC111224444	ndufa7	ENSSDUP00000018225	ENSSDUP00000011017	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit A7.	0.999
LOC111224444	ndufab1	ENSSDUP00000018225	ENSSDUP00000020880	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.999
LOC111224444	ndufb10	ENSSDUP00000018225	ENSSDUP00000011337	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit B10.	0.999
LOC111224444	ndufb11	ENSSDUP00000018225	ENSSDUP00000002592	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit B11.	0.999
LOC111224444	ndufb4	ENSSDUP00000018225	ENSSDUP00000003848	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit B4.	0.999
LOC111224444	ndufb5	ENSSDUP00000018225	ENSSDUP00000004174	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit B5.	0.999
LOC111224444	ndufb7	ENSSDUP00000018225	ENSSDUP00000011804	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit B7.	0.998
LOC111224444	ndufb9	ENSSDUP00000018225	ENSSDUP00000019193	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit B9; Belongs to the complex I LYR family.	0.999
LOC111224444	ndufs5	ENSSDUP00000018225	ENSSDUP00000011835	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit S5.	0.990
ndufa5	LOC111224444	ENSSDUP00000020055	ENSSDUP00000018225	NADH:ubiquinone oxidoreductase subunit A5.	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.998
ndufa5	ndufa7	ENSSDUP00000020055	ENSSDUP00000011017	NADH:ubiquinone oxidoreductase subunit A5.	NADH:ubiquinone oxidoreductase subunit A7.	0.997
ndufa5	ndufab1	ENSSDUP00000020055	ENSSDUP00000020880	NADH:ubiquinone oxidoreductase subunit A5.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.999
ndufa5	ndufb10	ENSSDUP00000020055	ENSSDUP00000011337	NADH:ubiquinone oxidoreductase subunit A5.	NADH:ubiquinone oxidoreductase subunit B10.	0.999
ndufa5	ndufb11	ENSSDUP00000020055	ENSSDUP00000002592	NADH:ubiquinone oxidoreductase subunit A5.	NADH:ubiquinone oxidoreductase subunit B11.	0.999
ndufa5	ndufb4	ENSSDUP00000020055	ENSSDUP00000003848	NADH:ubiquinone oxidoreductase subunit A5.	NADH:ubiquinone oxidoreductase subunit B4.	0.999
ndufa5	ndufb5	ENSSDUP00000020055	ENSSDUP00000004174	NADH:ubiquinone oxidoreductase subunit A5.	NADH:ubiquinone oxidoreductase subunit B5.	0.999
ndufa5	ndufb7	ENSSDUP00000020055	ENSSDUP00000011804	NADH:ubiquinone oxidoreductase subunit A5.	NADH:ubiquinone oxidoreductase subunit B7.	0.999
ndufa5	ndufb9	ENSSDUP00000020055	ENSSDUP00000019193	NADH:ubiquinone oxidoreductase subunit A5.	NADH:ubiquinone oxidoreductase subunit B9; Belongs to the complex I LYR family.	0.999
ndufa5	ndufs5	ENSSDUP00000020055	ENSSDUP00000011835	NADH:ubiquinone oxidoreductase subunit A5.	NADH:ubiquinone oxidoreductase subunit S5.	0.999