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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lumLumican. (342 aa)    
Predicted Functional Partners:
dcn
Decorin; May affect the rate of fibrils formation.
  
  
0.940
sparc
Secreted protein, acidic, cysteine-rich (osteonectin).
   
  
 0.852
ENSSDUP00000022629
SPARC-like 2.
   
  
 0.852
LOC111221871
Fibromodulin a.
  
 
0.772
LOC111217309
Fibromodulin b.
  
 
0.770
LOC111217330
Osteoglycin, paralog b.
 
 
 
0.750
ogn
Osteoglycin, paralog a.
 
 
 
0.750
kera
Keratocan.
  
 
0.737
aspn
Asporin.
  
 
0.735
bgn
Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
  
 
0.733
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.