Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111216948SERTA domain-containing protein. (323 aa)    
Predicted Functional Partners:
UBL5
Ubiquitin like 5.
    
   0.673
snrpb
Small nuclear ribonucleoprotein-associated protein.
    
   0.673
SERTAD2
SERTA domain containing 2b.
  
  
 0.587
zc3h18
Zinc finger CCCH-type containing 18.
      
 0.563
stn1
CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication.
    
 
 0.506
mrps18a
Mitochondrial ribosomal protein S18A.
      
 0.499
sertad4
SERTA domain containing 4.
      
 0.492
rnls
Renalase, FAD-dependent amine oxidase.
      
 0.491
RNF208
Ring finger protein 208.
      
 0.446
LOC111232097
Uncharacterized protein.
  
   
 0.409
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.