close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc97Coiled-coil domain containing 97. (348 aa)    
Predicted Functional Partners:
sf3b6
Splicing factor 3b, subunit 6.
    
 
 0.905
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 
 0.889
sf3b1
Splicing factor 3b, subunit 1.
    
 
 0.857
sf3b3
Splicing factor 3b, subunit 3.
    
 
 0.836
sf3a2
Splicing factor 3a, subunit 2.
   
 
 0.679
sf3b4
Splicing factor 3b, subunit 4.
    
 
 0.668
sf3a1
Splicing factor 3a, subunit 1.
   
 
 0.659
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 
 0.640
sf3a3
Splicing factor 3a, subunit 3.
   
 
 0.598
ctdp1
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1.
      
 0.570
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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