Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217951Uncharacterized protein; Belongs to the TOM1 family. (495 aa)    
Predicted Functional Partners:
tollip
Toll interacting protein.
   
 
 0.834
LOC111240293
Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.717
MYO6
Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.717
cuedc1
CUE domain containing 1b.
    
   0.703
ENSSDUP00000002726
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 0.530
ENSSDUP00000012805
Uncharacterized protein.
    
 0.530
ARF6
ADP ribosylation factor 6.
    
 0.530
arl15
ADP-ribosylation factor-like 15a.
    
 0.530
ENSSDUP00000033031
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 0.530
rps27a
Ribosomal protein S27a.
    
   0.515
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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