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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111221221Secreted phosphoprotein 1. (355 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.716
LOC111217580
Intersectin 2b.
   
 
  0.651
itsn2
Intersectin 2a.
   
 
  0.651
zfand4
Zinc finger, AN1-type domain 4.
    
  0.631
wdr76
WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family.
    
 0.629
ddb2
Damage-specific DNA binding protein 2.
    
 0.629
rps27a
Ribosomal protein S27a.
    
  0.525
itsn1
Intersectin 1 (SH3 domain protein).
   
 
  0.502
pex5l
Peroxisomal biogenesis factor 5-like a.
    
 0.471
ENSSDUP00000008186
Peroxisomal biogenesis factor 5-like b.
    
 0.471
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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