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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sptbn4Spectrin beta chain; Belongs to the spectrin family. (2438 aa)    
Predicted Functional Partners:
sptan1
Spectrin alpha, non-erythrocytic 1.
   
0.859
LOC111217580
Intersectin 2b.
     
 0.623
itsn2
Intersectin 2a.
     
 0.623
ENSSDUP00000000982
Uncharacterized protein.
   
 0.478
ENSSDUP00000004109
Ankyrin 2b, neuronal.
   
 0.478
ENSSDUP00000004200
Uncharacterized protein.
   
 0.478
ENSSDUP00000004213
Uncharacterized protein.
   
 0.478
LOC111219698
Uncharacterized protein.
   
 0.478
LOC111235209
Ankyrin 3a.
   
 0.478
ank1
Ankyrin 1, erythrocytic a.
   
 0.478
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.