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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhbdl1Rhomboid-related protein 1; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family. (382 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
      
 0.591
ARHGAP6-2
Rho GTPase activating protein 6.
      
 0.580
wdr24
WD repeat domain 24.
      
 0.563
rhot2
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 
 0.537
cog3
Component of oligomeric golgi complex 3.
      
 0.536
anks3
Ankyrin repeat and sterile alpha motif domain containing 3.
      
 0.533
ARHGAP6
Rho GTPase activating protein 6.
      
 0.495
LOC111233477
Rho GTPase activating protein 36.
      
 0.491
stoml1
Stomatin (EPB72)-like 1.
  
 0.422
LOC111238450
Prohibitin.
   
 0.416
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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