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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111224108Zgc:162730. (432 aa)    
Predicted Functional Partners:
exosc8
Exosome component 8.
   
  0.749
dcp2
Decapping mRNA 2.
   
 0.657
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 
 0.655
xrn1
5'-3' exoribonuclease 1.
    
 0.646
ENSSDUP00000014283
XRN_N domain-containing protein.
    
 0.646
dcp1a
Decapping mRNA 1A.
    
 0.556
exosc2
Exosome component 2.
    
 0.543
exosc1
Exosome component 1.
     
 0.542
MAPKAPK2
MAPK activated protein kinase 2; Belongs to the protein kinase superfamily.
    
 0.538
LOC111217307
MAPK activated protein kinase 2b; Belongs to the protein kinase superfamily.
    
 0.538
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.