STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217944Multidrug and toxin extrusion protein; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (584 aa)    
Predicted Functional Partners:
hsd17b10
Hydroxysteroid (17-beta) dehydrogenase 10; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.733
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
   
 
 0.621
trmt10a
tRNA methyltransferase 10A.
   
 0.526
Trmt10c
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 0.526
trmt10b
tRNA methyltransferase 10B.
   
 0.526
pdcd11
Programmed cell death 11.
  
    0.505
ENSSDUP00000010009
Si:ch73-174h16.5.
   
 
 0.485
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
   
 
 0.485
LOC111233251
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.452
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.452
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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