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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hecw1Si:ch211-188f17.1. (1598 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.760
ubb
Uncharacterized protein.
    
 0.740
ubc
Uncharacterized protein.
    
 0.740
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.698
LOC111228782
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.698
dvl1
Dishevelled segment polarity protein 1a.
    
 0.669
smad6
Mothers against decapentaplegic homolog.
    
 0.667
smad7
Mothers against decapentaplegic homolog.
    
 0.667
ENSSDUP00000023482
Mothers against decapentaplegic homolog.
    
 0.667
LOC111237191
Proteasome 26S subunit, non-ATPase 4b.
    
 0.637
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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