Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000002918Pentaxin. (188 aa)    
Predicted Functional Partners:
fgb
Fibrinogen beta chain.
   
 
 0.571
fgg
Fibrinogen gamma chain.
   
 
 0.552
ttr
Transthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain.
   
 
 0.541
c9
Complement component 9.
   
  
 0.496
cunh11orf53
Si:ch211-213d14.1.
      
 0.446
ENSSDUP00000021705
Uncharacterized protein; Belongs to the serpin family.
   
  
 0.431
LOC111236199
Serpin peptidase inhibitor, clade C (antithrombin), member 1; Belongs to the serpin family.
   
  
 0.431
LOC111236328
Apolipoprotein H.
   
 
 0.420
LOC111236329
Apolipoprotein H.
   
 
 0.420
serpind1
Serpin peptidase inhibitor, clade D (heparin cofactor), member 1; Belongs to the serpin family.
   
  
 0.416
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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