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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111233773Si:dkey-6n6.2. (301 aa)    
Predicted Functional Partners:
ENSSDUP00000006665
Decapping mRNA 1B.
    
 0.743
dcp1a
Decapping mRNA 1A.
    
 0.743
patl1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.724
patl2
PAT1 homolog 2.
    
 0.724
edc4
Enhancer of mRNA decapping 4.
    
 0.723
yjefn3
YjeF N-terminal domain containing 3.
  
 0.685
LOC111217536
Uncharacterized protein.
  
 0.685
naxe
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.
  
 0.685
LOC111229548
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
  
 0.685
lsm1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.660
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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