STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf207Zinc finger protein 207. (435 aa)    
Predicted Functional Partners:
bub3
BUB3 mitotic checkpoint protein.
   
 
 0.921
ENSSDUP00000002880
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.884
sf3b1
Splicing factor 3b, subunit 1.
   
    0.579
SRSF3
Serine and arginine rich splicing factor 3b.
   
    0.547
LOC111222859
RRM domain-containing protein.
   
    0.547
sf3a2
Splicing factor 3a, subunit 2.
   
 
 0.546
LOC111230553
RRM domain-containing protein.
   
 
 0.484
SRSF10
Serine and arginine rich splicing factor 10.
   
 
 0.484
cstf2
RRM domain-containing protein.
   
   0.433
zmat2
Zinc finger, matrin-type 2.
      
 0.420
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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