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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhx37DEAH (Asp-Glu-Ala-His) box polypeptide 37. (1159 aa)    
Predicted Functional Partners:
ddx49
DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.
   
 0.974
utp3
UTP3 small subunit processome component.
   
 0.966
utp25
UTP25 small subunit processor component.
   
 0.954
UTP14C
UTP14C small subunit processome component.
   
 0.952
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.952
noc4l
Nucleolar complex associated 4 homolog.
   
 0.950
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
 0.949
fcf1
FCF1 rRNA-processing protein.
   
 0.945
utp20
UTP20 small subunit processome component.
   
 0.944
utp11
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.943
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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