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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000003047Rho guanine nucleotide exchange factor (GEF) 38. (579 aa)    
Predicted Functional Partners:
LOC111235077
Bridging integrator 2a.
    
 
 0.658
amph
Amphiphysin.
    
 
 0.658
LOC111221945
Bridging integrator 2b.
    
 
 0.658
bin1
Bridging integrator 1a.
    
 
 0.658
LOC111234764
Bridging integrator 1b.
    
 
 0.658
LOC111221873
Uncharacterized protein.
    
 0.620
CDC42
Cell division cycle 42.
    
 0.620
LOC111233205
Uncharacterized protein.
    
 0.584
LOC111230104
Uncharacterized protein.
    
 0.584
rhoq
Ras homolog family member Q.
    
 0.576
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.