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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc2CCHC-type domain-containing protein. (1056 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.655
relch
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
    
 
 0.626
Znf518a
Si:ch211-214e3.5.
  
 
 
 0.524
LOC111220682
C2H2-type domain-containing protein.
  
 
 
 0.513
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.484
tent4a
Terminal nucleotidyltransferase 4A.
   
 
 0.464
tent4b
Terminal nucleotidyltransferase 4B.
   
 
 0.464
LOC111227697
Uncharacterized protein.
   
 
 0.464
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 
 0.439
tmem150b
Zgc:123244.
      
 0.434
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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