close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsr3Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis. (278 aa)    
Predicted Functional Partners:
mettl6
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
 
 
  
 0.831
tsr2
TSR2 ribosome maturation factor.
   
  
 0.782
bud23
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
  
 0.728
dus1l
Dihydrouridine synthase 1-like (S. cerevisiae).
   
  
 0.712
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
  
 0.681
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
  
 0.677
trmt12
tRNA methyltransferase 12 homolog.
   
  
 0.655
tsr1
TSR1 ribosome maturation factor.
   
  
 0.653
dus2
Dihydrouridine synthase 2.
   
  
 0.650
dtwd2
DTW domain containing 2.
      
 0.606
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.