Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000003109Protein kinase domain-containing protein. (353 aa)    
Predicted Functional Partners:
LOC111233181
Trio Rho guanine nucleotide exchange factor a.
 
  
  0.917
LOC111221697
Rho guanine nucleotide exchange factor (GEF) 25b.
 
   
  0.912
ENSSDUP00000007847
Uncharacterized protein.
 
  
  0.889
ENSSDUP00000017173
DH domain-containing protein.
 
   
  0.874
ENSSDUP00000007895
Kalirin RhoGEF kinase b.
 
   
  0.807
ENSSDUP00000003543
Uncharacterized protein.
 
  
  0.776
ENSSDUP00000005433
Uncharacterized protein.
 
  
  0.766
LOC111217580
Intersectin 2b.
   
 0.689
itsn2
Intersectin 2a.
   
 0.689
rhoq
Ras homolog family member Q.
    
 0.659
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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