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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000003109Protein kinase domain-containing protein. (353 aa)    
Predicted Functional Partners:
LOC111221697
Rho guanine nucleotide exchange factor (GEF) 25b.
 
   
  0.904
LOC111233181
Trio Rho guanine nucleotide exchange factor a.
 
  
   0.901
ENSSDUP00000007847
Uncharacterized protein.
 
  
   0.883
ENSSDUP00000017173
DH domain-containing protein.
 
   
  0.863
ENSSDUP00000007895
Kalirin RhoGEF kinase b.
 
   
  0.790
ENSSDUP00000003543
Uncharacterized protein.
 
  
   0.762
ENSSDUP00000005433
Uncharacterized protein.
 
  
   0.752
rhoq
Ras homolog family member Q.
   
 0.638
rhou
Uncharacterized protein.
   
 0.638
LOC111228093
Uncharacterized protein.
   
 0.638
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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