Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc35f4Solute carrier family 35 member F4. (466 aa)    
Predicted Functional Partners:
ebna1bp2
EBNA1 binding protein 2.
      
 0.717
tmem268
Uncharacterized protein.
      
 0.716
cdc42se2
CDC42 small effector 2.
      
 0.712
anapc13
Anaphase promoting complex subunit 13.
      
 0.712
tsr3
Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.650
aldh16a1
Aldehyde dehydrogenase 16 family, member A1.
      
 0.633
tmem266
Transmembrane protein 266.
      
 0.631
bud13
BUD13 homolog.
      
 0.630
kcne4
Potassium voltage-gated channel, Isk-related family, member 4.
      
 0.629
LOC111216326
Ectonucleotide pyrophosphatase/phosphodiesterase 1.
      
 0.628
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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