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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111219130PR domain containing 2, with ZNF domain a. (1423 aa)    
Predicted Functional Partners:
ENSSDUP00000012634
C-type lectin domain-containing protein.
    
 0.730
LOC111234101
C-type lectin domain-containing protein.
    
 0.730
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
     
  0.650
LOC111239991
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
     
  0.650
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
     
  0.650
LOC111225945
C-type lectin domain-containing protein.
    
 0.596
LOC111226152
C-type lectin domain-containing protein.
    
 0.596
LOC111226154
C-type lectin domain-containing protein.
    
 0.596
LOC111225950
C-type lectin domain-containing protein.
    
 0.596
ENSSDUP00000021318
RRM domain-containing protein.
  
     0.436
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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