close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spata17Spermatogenesis associated 17. (314 aa)    
Predicted Functional Partners:
spata4
Spermatogenesis associated 4.
   
  
 0.601
spata20
Spermatogenesis associated 20.
      
 0.600
spata7
Spermatogenesis associated 7.
      
 0.593
tdrd1
Tudor domain containing 1.
      
 0.572
gpatch2
G-patch domain containing 2.
      
 0.557
ccdc136
Coiled-coil domain containing 136b.
   
 0.544
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 
 0.542
exoc4
Exocyst complex component 4.
    
 0.510
rab11a
RAB11a, member RAS oncogene family.
   
 0.477
LOC111231922
Uncharacterized protein.
   
 0.477
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.