close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bbs9Bardet-Biedl syndrome 9. (438 aa)    
Predicted Functional Partners:
ttc8
Tetratricopeptide repeat domain 8.
  
 
 0.997
bbs7
Bardet-Biedl syndrome 7.
  
 
 0.997
bbs1
Bardet-Biedl syndrome 1.
    
 0.997
bbs2
Bardet-Biedl syndrome 2.
  
 0.997
bbs4
Bardet-Biedl syndrome 4.
   
 0.996
lztfl1
Leucine zipper transcription factor-like 1.
    
 0.953
bbs5
Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.
   
 0.949
ENSSDUP00000013909
BBSome interacting protein 1.
    
 0.885
LOC111229008
Kelch-like family member 40a.
   
 0.858
LOC111222717
Kelch-like family member 41b.
   
 0.858
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.