STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2AZ1Histone H2A; Belongs to the histone H2A family. (154 aa)    
Predicted Functional Partners:
LOC111239651
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
  0.909
aifm1
Apoptosis inducing factor mitochondrion associated 1.
     
  0.900
ep400
E1A binding protein p400.
    
 0.897
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
 0.883
vps72
Vacuolar protein sorting 72 homolog a.
    
 
 0.877
znhit1
Zinc finger, HIT-type containing 1.
    
 
 0.852
actr6
Actin related protein 6; Belongs to the actin family.
   
 
 0.852
ENSSDUP00000000441
AT rich interactive domain 4A (RBP1-like).
   
 0.849
dmap1
DNA methyltransferase 1 associated protein 1.
    
 
 0.849
arid4b
Translocase of outer mitochondrial membrane 20.
   
 0.849
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.