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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem242Transmembrane protein 242. (152 aa)    
Predicted Functional Partners:
serac1
Serine active site containing 1.
      
 0.629
siae
Sialic acid acetylesterase.
      
 0.606
gtf2h5
General transcription factor IIH, polypeptide 5.
      
 0.602
tfb1m
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
      
 0.589
tmem70
Transmembrane protein 70.
      
 0.586
cryzl1
Crystallin, zeta (quinone reductase)-like 1.
      
 0.583
urb1
URB1 ribosome biogenesis homolog.
      
 0.571
heatr1
HEAT repeat containing 1.
      
 0.562
tmem196
Uncharacterized protein.
      
 0.534
LOC111225741
TUB like protein 4b; Belongs to the TUB family.
      
 0.476
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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