Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000003333Si:ch73-81k8.2. (200 aa)    
Predicted Functional Partners:
fkbpl
FKBP prolyl isomerase like.
   
    0.970
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.885
Spag17
Uncharacterized protein.
    
 
 0.835
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.832
armc3
Armadillo repeat containing 3.
      
 0.768
spata4
Spermatogenesis associated 4.
    
 
 0.706
cfap99
Cilia and flagella associated protein 99.
    
 
 0.687
spata17
Spermatogenesis associated 17.
    
 
 0.684
dlec1
DLEC1 cilia and flagella associated protein.
    
 
 0.668
mycbpap
Mycbp associated protein.
    
   0.665
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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