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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARVCFARVCF delta catenin family member b. (948 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.848
cdh5
Cadherin 5; Cadherins are calcium-dependent cell adhesion proteins.
    
 0.792
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.738
ENSSDUP00000008357
Uncharacterized protein.
   
 0.738
ctnna1
Catenin (cadherin-associated protein), alpha 1.
   
 0.738
LOC111228639
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
    
 0.730
LOC111236417
Cadherin 31; Cadherins are calcium-dependent cell adhesion proteins.
    
 0.730
zbtb33
Zinc finger and BTB domain containing 33.
    
 
 0.695
cdh15
Cadherin 15, type 1, M-cadherin (myotubule); Cadherins are calcium-dependent cell adhesion proteins.
    
 0.665
LOC111231822
Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins.
    
 0.665
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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