STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sh3bp5SH3-domain binding protein 5b (BTK-associated). (475 aa)    
Predicted Functional Partners:
rab11a
RAB11a, member RAS oncogene family.
    
 
 0.559
LOC111231922
Uncharacterized protein.
    
 
 0.559
LOC111231923
RAB11B, member RAS oncogene family, a.
    
 
 0.559
LOC111222643
RAB11a, member RAS oncogene family, like.
    
 
 0.559
LOC111229181
Uncharacterized protein.
    
 
 0.559
LOC111217025
Reticulon 4 receptor-like 1a.
      
 0.558
stk10
Serine/threonine kinase 10.
   
  
 0.540
mthfs
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
   
  
 0.508
dhps
Deoxyhypusine synthase.
      
 0.495
trappc10
Trafficking protein particle complex 10.
      
 0.481
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.