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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DHX15DEAH-box helicase 15. (767 aa)    
Predicted Functional Partners:
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.974
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.972
utp3
UTP3 small subunit processome component.
   
 0.970
rbm17
RNA binding motif protein 17.
   
 0.970
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.962
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.954
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.953
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.951
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.949
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.946
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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