Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111216861Non-specific serine/threonine protein kinase. (663 aa)    
Predicted Functional Partners:
nck2
Cytoplasmic protein.
    
 0.966
nck1
Cytoplasmic protein.
    
 0.966
raf1
Raf-1 proto-oncogene, serine/threonine kinase a.
   
0.939
CDC42
Cell division cycle 42.
   
 0.938
map2k1
Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily.
    
0.926
LOC111233205
Uncharacterized protein.
   
 0.875
LOC111230104
Uncharacterized protein.
   
 0.875
RAC1
Rac family small GTPase 1.
   
 0.866
LOC111227294
Uncharacterized protein.
   
 0.866
LOC111235860
Rac family small GTPase 2.
   
 0.866
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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