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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpoxCoproporphyrinogen oxidase. (457 aa)    
Predicted Functional Partners:
ppox
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.995
urod
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 0.995
ENDOV
Endonuclease V.
  
 0.947
hemk1
HemK methyltransferase family member 1.
   
 
 0.909
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
   
 
 0.909
hmbs
Hydroxymethylbilane synthase a.
  
  
 0.765
alad
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
  
 0.752
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.731
uros
Uroporphyrinogen III synthase.
     
 0.731
ogfod1
2-oxoglutarate and iron-dependent oxygenase domain containing 1.
   
  
 0.711
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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