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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111233789Uncharacterized protein. (294 aa)    
Predicted Functional Partners:
LOC111229355
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
   
 0.969
LOC111240026
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.932
LOC111232930
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.932
LOC111217845
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.932
LOC111227196
TNF superfamily member 14; Belongs to the tumor necrosis factor family.
   
 
  0.906
LOC111218446
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
   
 0.793
LOC111232361
CD40 ligand; Belongs to the tumor necrosis factor family.
   
 0.759
LOC111236712
Ig-like domain-containing protein.
   
 0.729
LOC111222585
Tumor necrosis factor b (TNF superfamily, member 2).
   
 0.697
ENSSDUP00000005311
Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.
   
 0.491
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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