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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zrsr2Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (625 aa)    
Predicted Functional Partners:
LOC111230140
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.932
LOC111217609
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.932
LOC111219724
Serine and arginine rich splicing factor 2a.
   
 0.806
LOC111230261
RRM domain-containing protein.
   
 0.806
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
   
 0.804
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
   
 
 0.777
polr2k
Uncharacterized protein.
     
 0.773
snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
   
 
 0.756
LOC111234408
Uncharacterized protein.
   
 0.739
ENSSDUP00000005354
RRM domain-containing protein.
   
 0.739
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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