LOC111229840 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111229840

Mitogen-activated protein kinase 8 interacting protein 1a. (466 aa)

Predicted Functional Partners:

map2k7

0.653

LOC111238956

0.520

LOC111232323

0.520

tspoap1

0.520

rimbp2

0.520

LOC111226417

0.466

LOC111219534

0.466

mapk10

0.466

LOC111235092

0.466

LOC111216946

0.428

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111216946	LOC111229840	ENSSDUP00000003076	ENSSDUP00000003700	Kinesin light chain 3.	Mitogen-activated protein kinase 8 interacting protein 1a.	0.428
LOC111219534	LOC111226417	ENSSDUP00000009071	ENSSDUP00000006000	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.910
LOC111219534	LOC111229840	ENSSDUP00000009071	ENSSDUP00000003700	Mitogen-activated protein kinase.	Mitogen-activated protein kinase 8 interacting protein 1a.	0.466
LOC111219534	map2k7	ENSSDUP00000009071	ENSSDUP00000027268	Mitogen-activated protein kinase.	Mitogen-activated protein kinase kinase 7.	0.989
LOC111226417	LOC111219534	ENSSDUP00000006000	ENSSDUP00000009071	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.910
LOC111226417	LOC111229840	ENSSDUP00000006000	ENSSDUP00000003700	Mitogen-activated protein kinase.	Mitogen-activated protein kinase 8 interacting protein 1a.	0.466
LOC111226417	LOC111235092	ENSSDUP00000006000	ENSSDUP00000031962	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.910
LOC111226417	map2k7	ENSSDUP00000006000	ENSSDUP00000027268	Mitogen-activated protein kinase.	Mitogen-activated protein kinase kinase 7.	0.990
LOC111226417	mapk10	ENSSDUP00000006000	ENSSDUP00000023234	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.910
LOC111229840	LOC111216946	ENSSDUP00000003700	ENSSDUP00000003076	Mitogen-activated protein kinase 8 interacting protein 1a.	Kinesin light chain 3.	0.428
LOC111229840	LOC111219534	ENSSDUP00000003700	ENSSDUP00000009071	Mitogen-activated protein kinase 8 interacting protein 1a.	Mitogen-activated protein kinase.	0.466
LOC111229840	LOC111226417	ENSSDUP00000003700	ENSSDUP00000006000	Mitogen-activated protein kinase 8 interacting protein 1a.	Mitogen-activated protein kinase.	0.466
LOC111229840	LOC111232323	ENSSDUP00000003700	ENSSDUP00000014845	Mitogen-activated protein kinase 8 interacting protein 1a.	Si:ch211-105f12.2.	0.520
LOC111229840	LOC111235092	ENSSDUP00000003700	ENSSDUP00000031962	Mitogen-activated protein kinase 8 interacting protein 1a.	Mitogen-activated protein kinase.	0.466
LOC111229840	LOC111238956	ENSSDUP00000003700	ENSSDUP00000009763	Mitogen-activated protein kinase 8 interacting protein 1a.	Uncharacterized protein.	0.520
LOC111229840	map2k7	ENSSDUP00000003700	ENSSDUP00000027268	Mitogen-activated protein kinase 8 interacting protein 1a.	Mitogen-activated protein kinase kinase 7.	0.653
LOC111229840	mapk10	ENSSDUP00000003700	ENSSDUP00000023234	Mitogen-activated protein kinase 8 interacting protein 1a.	Mitogen-activated protein kinase.	0.466
LOC111229840	rimbp2	ENSSDUP00000003700	ENSSDUP00000031543	Mitogen-activated protein kinase 8 interacting protein 1a.	RIMS binding protein 2.	0.520
LOC111229840	tspoap1	ENSSDUP00000003700	ENSSDUP00000024294	Mitogen-activated protein kinase 8 interacting protein 1a.	Uncharacterized protein.	0.520
LOC111232323	LOC111229840	ENSSDUP00000014845	ENSSDUP00000003700	Si:ch211-105f12.2.	Mitogen-activated protein kinase 8 interacting protein 1a.	0.520